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Alexis Mergez
Pan1c
Merge requests
!18
v1.12a
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Merged
v1.12a
dev
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main
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87
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1
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15
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Alexis Mergez
requested to merge
dev
into
main
8 months ago
Overview
0
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87
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1
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15
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Changelogs :
Moved general purpose rules to rules/tools.smk
Added report creation options
Added logs for several rules (in logs/)
Added SyRI on chrInputs in addition to input assemblies
Renamed chromosomes to prevent SyRI from erroring out when unable to match chromosomes
Added high priority to the main rules of the workflow
Reworked 1D viz for the report
Removed haplotypes grouping by sample name in Panacus
Moved compression steps to a dedicated rule
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