5!

See merge request !5

Add in help which parameter corresponds to bwa index. #4

add description column diamond output #49, add cd-hit parameter identity #47, merge ch-dit and python parser in one process #46, change output file names #40, modify y axis and title in Kaiju graphs #35 #36, modify memory for certain process #24

replace desman Lengths.py by fasta_length.pl #34, modify aln2taxaffi.py #31, add diamond and diamond parser to main.nf #32, modify nextflow.config and image Singularity

rename variables and modify length of lines of bin/Script_quantification_clusters_opti.py script #33

update samtools version into modules bioinfo_bwa_samtools and bioinfo_bwa_samtools_subread, modification of bin/Script_renameVcn.py #14 and modification of main.nf

add Singularity image (no R) #25 and modification of main.nf, nextflow.config and python / perl scripts in order to run the pipeline with Singularity image and with module load (user choice) on genologin slurm cluster